Read types-Read Class

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Choosing "All" for read class tabulates the fate of all reads: non-matching, multiply matching, single-end unique matching or paired-end unique matching. Choosing "matching" shows the genomic features hit by just the aligning reads: exons, introns, both, splice junctions or intergenic. Choosing "positional" generates a "canonical distribution" plot, showing the positional distribution of reads flanking canonical genomic landmarks.